novoBreak

novoBreak (Chong et al. 2017) is a tool for structural variations (deletions, duplications, inversions, translocations) detection on Illumina sequencing data. This tool has won several rounds of participated ICGC-TCGA DREAM Mutation Calling Challenge SV Sub-challenge. The source code, binary executable package and documentation can be downloaded here. Write to Zechen Chong if you have any questions.

Rainbow

Rainbow (Chong et al. 2012) is a tool for efficient clustering and assembling RAD-seq reads. The source code and documentation can be downloaded here. Write to Zechen Chong or Jue Ruan if you have any questions.